Index

A

add_curr_param_data_to_list() (IterativeBayesianFilter method)

B

backup_sim_data() (DynamicSystem class method) (IODynamicSystem method)

BayesianCalibration (class in grainlearning.bayesian_calibration)

C

check_config() (PreprocessorTriaxialCompression class method) compute_effective_sample_size() (SMC method) compute_estimated_params() (DynamicSystem method) (IODynamicSystem method)

compute_inv_normalized_sigma() (DynamicSystem method) (IODynamicSystem method)

D

data_assimilation_loop() (SMC method)

draw_samples_within_bounds() (GaussianMixtureModel method) DynamicSystem (class in grainlearning.dynamic_systems)

E

expand_and_normalize_weighted_samples() (GaussianMixtureModel method)

extract_tensors() (in module grainlearning.rnn.windows)

F

from_dict() (BayesianCalibration class method) (DynamicSystem class method) (GaussianMixtureModel class method) (IODynamicSystem class method) (IterativeBayesianFilter class method) (SMC class method)

G

GaussianMixtureModel (class in grainlearning.sampling) generate_params_qmc() (in module grainlearning.sampling) get_best_run_from_sweep() (in module grainlearning.rnn.predict) get_covariance_matrices() (SMC method) get_default_config() (in module grainlearning.rnn.train) (PreprocessorTriaxialCompression class method) get_dimensions() (Preprocessor class method) (PreprocessorTriaxialCompression class method) get_inv_normalized_sigma() (DynamicSystem method) (IODynamicSystem method) get_likelihoods() (SMC static method) get_most_prob_params() (BayesianCalibration method) get_obs_data() (IODynamicSystem method) get_posterior_at_time() (SMC method) get_posteriors() (SMC static method) get_pretrained_model() (in module grainlearning.rnn.predict) get_sim_data_files() (DynamicSystem class method) (IODynamicSystem method) get_split() (Preprocessor class method) (PreprocessorTriaxialCompression class method)

grainlearning.bayesian_calibration module grainlearning.dynamic_systems module grainlearning.inference module grainlearning.iterative_bayesian_filter module grainlearning.rnn.models module grainlearning.rnn.predict module grainlearning.rnn.preprocessor module grainlearning.rnn.train module grainlearning.rnn.windows module grainlearning.sampling module

I

increase_curr_iter() (BayesianCalibration method) initialize() (IterativeBayesianFilter method)

IODynamicSystem (class in grainlearning.dynamic_systems) IterativeBayesianFilter (class in grainlearning.iterative_bayesian_filter)

L

load_all() (BayesianCalibration method) load_and_process() (BayesianCalibration method) load_and_run_one_iteration() (BayesianCalibration method) load_config() (in module grainlearning.rnn.predict) load_gmm_from_file() (GaussianMixtureModel method) load_model() (in module grainlearning.rnn.predict)

load_param_data() (DynamicSystem class method) (IODynamicSystem method) load_proposal_from_file() (IterativeBayesianFilter method) load_sim_data() (DynamicSystem class method) (IODynamicSystem method) load_system() (BayesianCalibration method)

M

make_splits() (Preprocessor class method) (PreprocessorTriaxialCompression class method) module grainlearning.bayesian_calibration grainlearning.dynamic_systems grainlearning.inference grainlearning.iterative_bayesian_filter grainlearning.rnn.models grainlearning.rnn.predict grainlearning.rnn.preprocessor grainlearning.rnn.train grainlearning.rnn.windows grainlearning.sampling

move_data_to_sim_dir() (DynamicSystem class method) (IODynamicSystem method)

P

pad_initial() (Preprocessor class method) (PreprocessorTriaxialCompression class method) plot_uq_in_time() (BayesianCalibration method) predict_macroscopics() (in module grainlearning.rnn.predict) predict_over_windows() (in module grainlearning.rnn.windows)

prepare_datasets() (Preprocessor method) (PreprocessorTriaxialCompression method) prepare_single_dataset() (Preprocessor method) (PreprocessorTriaxialCompression method) Preprocessor (class in grainlearning.rnn.preprocessor) PreprocessorTriaxialCompression (class in grainlearning.rnn.preprocessor)

R

regenerate_params() (GaussianMixtureModel method) resample() (BayesianCalibration method) reset_inv_normalized_sigma() (DynamicSystem method) (IODynamicSystem method) rnn_model() (in module grainlearning.rnn.models)

run() (BayesianCalibration method) run_callback() (BayesianCalibration method) run_inference() (IterativeBayesianFilter method) run_one_iteration() (BayesianCalibration method) run_sampling() (IterativeBayesianFilter method)

S

save_gmm_to_file() (GaussianMixtureModel method) save_proposal_to_file() (IterativeBayesianFilter method) set_ctrl_data() (DynamicSystem method) (IODynamicSystem method) set_obs_data() (DynamicSystem method) (IODynamicSystem method) set_param_data() (DynamicSystem method) (IODynamicSystem method)

set_posteriors() (SMC method) set_sim_data() (DynamicSystem method) (IODynamicSystem method) set_up_sim_dir() (DynamicSystem class method) (IODynamicSystem method) SMC (class in grainlearning.inference) solve() (IterativeBayesianFilter method) standardize_outputs() (Preprocessor class method) (PreprocessorTriaxialCompression class method)

T

train() (GaussianMixtureModel method) (in module grainlearning.rnn.train)

train_without_wandb() (in module grainlearning.rnn.train)

W

warning_config_field() (Preprocessor class method) (PreprocessorTriaxialCompression class method) windowize_single_dataset() (in module grainlearning.rnn.windows)

windowize_train_val_test() (in module grainlearning.rnn.windows) write_params_to_table() (DynamicSystem class method) (IODynamicSystem method)